RnoEX6034303 @ rn6
Exon Skipping
Gene
ENSRNOG00000012208 | Itgb7
Description
integrin subunit beta 7 [Source:RGD Symbol;Acc:2929]
Coordinates
chr7:143822102-143824013:-
Coord C1 exon
chr7:143823820-143824013
Coord A exon
chr7:143822763-143822986
Coord C2 exon
chr7:143822102-143822321
Length
224 bp
Sequences
Splice sites
3' ss Seq
TCTCTGCTTTCCCCTCCCAGCTG
3' ss Score
10.72
5' ss Seq
GAGGTACCT
5' ss Score
7.63
Exon sequences
Seq C1 exon
GTGGATTTCTGGGTCACTCTTCAAGCCTCTCACTGCCTCCCAGAAGCCCATGTCCTACGGCTCTGGGCCCTTGGCTTCTCAGAGGAGTTAACTGTGGAGCTGCACACACTGTGTGACTGCAATTGTAGTGATGCCCAGCCTCGCGCTCCTTACTGCAGCGATGGACAGGGGGACCTTCAATGCGGGATATGCAG
Seq A exon
CTGTGCCCCTGGCCGCCTTGGTCAGCTGTGTGAATGCTCTGAGGCTGACCTGTCCTCCCCAGATTTGGAATCTGGTTGCCGGGCCCCCAATGGGACAGGGCCCCTGTGCAGCGGGAAGGGTCGATGCCAATGTGGACGCTGCAGTTGCAGTGGACAGAGCTCTGGGCGTCTGTGCGAGTGTGATGATGCCAGCTGTGAGCGACACGAGGGCATCCTCTGTGGAG
Seq C2 exon
GCTTTGGCCACTGCCAGTGTGGAGTGTGTCACTGCCATGCCAACCGCACTGGCAGAGCATGTGAGTGCAGTGAGAGTGTGGACAGCTGCGTTAGTCCCGAAGGAGGGCTCTGCAGTGGGCATGGTGACTGCAAATGCAACCGTTGCCAGTGCCTGGATGGCTACTACGGGGCTCTGTGTGACCAGTGCCTAGGCTGCAAGTCACCATGTGAGCAATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012208-'14-11,'14-9,15-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0036213=Integrin_beta=PD(9.1=60.0)
A:
NO
C2:
PF079748=EGF_2=WD(100=51.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTTGGCTTCTCAGAGGAGT
R:
TCACACAGAGCCCCGTAGTAG
Band lengths:
308-532
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]