DreEX0040151 @ danRer10
Exon Skipping
Gene
ENSDARG00000016939 | itgb2
Description
integrin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-110411-4]
Coordinates
chr9:45164646-45166263:-
Coord C1 exon
chr9:45166076-45166263
Coord A exon
chr9:45165330-45165562
Coord C2 exon
chr9:45164646-45164862
Length
233 bp
Sequences
Splice sites
3' ss Seq
TAACCTTACTGTGTCCACAGGTG
3' ss Score
10.84
5' ss Seq
CAGGTGAAT
5' ss Score
6.6
Exon sequences
Seq C1 exon
GTGATTTTTGATGTGACGGTGACAGTGGATAGATGCATCAATGATCAGAGCTTCTCCATCGGGCCATTGGGCTTCAATGAAAAGCTGAAGGTGAACGTTCAGACTCTCTGCGAATGTAATTGTGGTGATCCCCCTGGAGTTCATCCTCACTGTAAAGGACAGGGTAAAGTTGTCTGCGGCAGCTGCAA
Seq A exon
GTGTAATGATGGCTTCATAGGACAGCTCTGTGAGTGCACAATAGGTAAAAAAGATGAGGCCTCATTTAAAGCCCAGTGCCGGAAAGACAATGGCACTGAATGTGAAGGCAAAGGAGACTGTGTGTGTGGACGGTGTCAGTGCCATTTAACAGAGGGTAACGGACATTTCTATGGCGAACACTGTGAATGCGACGATGAACACTGTGAAAAGTTTGACAATAAACAGTGTGCAG
Seq C2 exon
GTCATGGCAAGTGCAAATGTGGCAAATGTGAGTGTGATGACGGCTATGAGGGAACAGCTTGTCACTGCGCTAAATCCGACAATGAATGCAAGATTGACAGCCATGTTTGTTATAACCGCGGTAAATGTGTATGTAACCAGTGCGAATGTGAAAGGGGATACAAGGGACCCTACTGCAAAACCTGTCCTACATGTCAACGTCCGTGTCAACAGTCCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000016939-'12-11,'12-10,13-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0036213=Integrin_beta=PD(9.1=60.3)
A:
PF079748=EGF_2=PU(32.3=12.7)
C2:
PF079748=EGF_2=PD(64.5=27.4),PF079748=EGF_2=WD(100=41.1),PF079657=Integrin_B_tail=PU(5.0=5.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACGTTCAGACTCTCTGCGA
R:
CTGTTGACACGGACGTTGACA
Band lengths:
308-541
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]