RnoEX6038226 @ rn6
Exon Skipping
Gene
ENSRNOG00000032884 | Scn11a
Description
sodium voltage-gated channel alpha subunit 11 [Source:RGD Symbol;Acc:3630]
Coordinates
chr8:128509306-128515250:-
Coord C1 exon
chr8:128514977-128515250
Coord A exon
chr8:128510523-128510641
Coord C2 exon
chr8:128509306-128509398
Length
119 bp
Sequences
Splice sites
3' ss Seq
GTTGTGATTTTTCTTCACAGACA
3' ss Score
9.01
5' ss Seq
TTCATATCC
5' ss Score
-14.87
Exon sequences
Seq C1 exon
GGTGAAGATGGAGGAGAGGTACTACCCGGTGATCTTCCCGGACGAGCGGAATTTCCGCCCCTTCACTTCCGACTCTCTGGCTGCCATAGAGAAGCGGATTGCTATCCAAAAGGAGAGGAAGAAGTCCAAAGACAAGGCGGCAGCTGAGCCCCAGCCTCGGCCTCAGCTTGACCTAAAGGCCTCCAGGAAGTTACCTAAGCTTTATGGTGACATTCCCCCTGAGCTTGTAGCGAAGCCTCTGGAAGACCTGGACCCATTCTACAAAGACCATAAG
Seq A exon
ACATTCATGGTGTTGAACAAGAAGAGAACAATTTATCGCTTCAGCGCCAAGCGGGCCTTGTTCATTCTGGGGCCTTTTAATCCCCTCAGAAGCTTAATGATTCGTATCTCTGTCCATTC
Seq C2 exon
AGTCTTTAGCATGTTCATCATCTGCACGGTGATCATCAACTGTATGTTCATGGCGAATTCTATGGAGAGAAGTTTCGACAACGACATTCCCGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000032884-'12-5,'12-4,15-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.180 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0052026=Ion_trans=PU(0.8=6.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCTTCACTTCCGACTCTCT
R:
CCGTGCAGATGATGAACATGC
Band lengths:
246-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]