RnoEX6038233 @ rn6
Exon Skipping
Gene
ENSRNOG00000032884 | Scn11a
Description
sodium voltage-gated channel alpha subunit 11 [Source:RGD Symbol;Acc:3630]
Coordinates
chr8:128494140-128497333:-
Coord C1 exon
chr8:128497192-128497333
Coord A exon
chr8:128495155-128495352
Coord C2 exon
chr8:128494140-128494313
Length
198 bp
Sequences
Splice sites
3' ss Seq
CTGTGTTCTGCCCCTTGCAGATC
3' ss Score
12.51
5' ss Seq
GAGGTAGGA
5' ss Score
8.24
Exon sequences
Seq C1 exon
ACCCTGTCCCAATGGTTCTACGTGCGATAAAACCACATTGAACCCAGACAATAATTATACAAAGTTTGACAACTTTGGCTGGTCCTTTCTCGCCATGTTCCGGGTTATGACTCAAGACTCCTGGGAGAGGCTTTACCGACAG
Seq A exon
ATCCTGCGGACCTCTGGGATCTACTTTGTCTTCTTCTTCGTGGTGGTCATCTTCCTGGGCTCCTTCTACCTGCTTAACCTAACCCTGGCTGTTGTCACCATGGCTTATGAAGAACAGAACAGAAATGTAGCTGCTGAGACAGAGGCCAAGGAGAAAATGTTTCAGGAAGCCCAGCAGCTGTTAAGGGAGGAGAAGGAG
Seq C2 exon
GCTCTGGTTGCCATGGGAATTGACAGAAGTTCCCTTAATTCCCTTCAAGCTTCATCCTTTTCCCCGAAGAAGAGGAAGTTTTTCGGTAGTAAGACAAGAAAGTCCTTCTTTATGAGAGGGTCCAAGACGGCCCAAGCCTCAGCGTCTGATTCAGAGGACGATGCCTCTAAAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000032884-'21-14,'21-13,22-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.021 A=0.076 C2=0.207
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=FE(19.8=100)
A:
PF0052026=Ion_trans=PD(13.1=47.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACAACTTTGGCTGGTCCTT
R:
AGGCATCGTCCTCTGAATCAGA
Band lengths:
242-440
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]