RnoEX6039673 @ rn6
Exon Skipping
Gene
ENSRNOG00000052194 | AABR07067728.1
Description
dynein, axonemal, heavy chain 7 [Source:NCBI gene;Acc:252893]
Coordinates
chr9:59583424-59588625:-
Coord C1 exon
chr9:59588563-59588625
Coord A exon
chr9:59584472-59584534
Coord C2 exon
chr9:59583424-59583529
Length
63 bp
Sequences
Splice sites
3' ss Seq
TTTTCATGTATTTTATGCAGGAC
3' ss Score
8.95
5' ss Seq
TTGGTAATT
5' ss Score
5.73
Exon sequences
Seq C1 exon
GATAAACTATCCACTAAAGAAAAATCTAAGACACCAGTGAGATTCCTACCACAGTTGGCTATG
Seq A exon
GACAAACCATCCAGTAAAGAAAAGGCCAAGACGCCGACAAGAGCTTTACCACAGTTAACTTTG
Seq C2 exon
ACAGGGGTCAAGCCCCAGTGGCAGCAGACTGCTCCATCATTCCATTTAAATGTCAAACAGGAAAACCCGATAGAACCCTATAATGTTAAAAATGAGCAGTCATATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000052194-'1-2,'1-1,3-2=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCACTAAAGAAAAATCTAAGACACC
R:
GGGTTCTATCGGGTTTTCCTGT
Band lengths:
132-195
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]