HsaEX6017546 @ hg19
Exon Skipping
Gene
ENSG00000118997 | DNAH7
Description
dynein, axonemal, heavy chain 7 [Source:HGNC Symbol;Acc:18661]
Coordinates
chr2:196913020-196922840:-
Coord C1 exon
chr2:196922778-196922840
Coord A exon
chr2:196915911-196915973
Coord C2 exon
chr2:196913020-196913128
Length
63 bp
Sequences
Splice sites
3' ss Seq
CCTTCATATTTTTCACACAGGAG
3' ss Score
8.03
5' ss Seq
ATGGTAACT
5' ss Score
6.06
Exon sequences
Seq C1 exon
GATAAATCGGCCAGCAAAGAAAAATCCAAGAAACCAGTAAGATTTCTACCACAGCTGTCTATG
Seq A exon
GAGAAATTAGCCAGCAAAGAAAAGTTCAAGGCACCAGCAAGAGCTTTACCACAGCTGTCTATG
Seq C2 exon
GTGAGTACAAAGCCCCACTGGCAGCAGGCAGCTCCATCATTCCATTTGAGTGTAAAGCAGGATGATGAGAGTCCAGAACCATTTAGTGTTAAAAATGAACAGTCCCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000118997-'3-5,'3-4,4-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.929 C2=0.973
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGCCAGCAAAGAAAAATCCA
R:
TCTGGACTCTCATCATCCTGCT
Band lengths:
133-196
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)