MmuEX7000173 @ mm10
Exon Skipping
Gene
ENSMUSG00000096141 | Dnah7a
Description
dynein, axonemal, heavy chain 7A [Source:MGI Symbol;Acc:MGI:2685838]
Coordinates
chr1:53698030-53702080:-
Coord C1 exon
chr1:53702018-53702080
Coord A exon
chr1:53698632-53698694
Coord C2 exon
chr1:53698030-53698528
Length
63 bp
Sequences
Splice sites
3' ss Seq
CTTTCGTGTATTTTATGCAGGAT
3' ss Score
8.34
5' ss Seq
TTGGTAATT
5' ss Score
5.73
Exon sequences
Seq C1 exon
GATAAGCTATCCACTAAAGGCAAATCAAAGACGCCAGTGAGATTCCTACCACAGTTGCCTATG
Seq A exon
GATAAACTATCCAGCAAAGAAAAGGTCAAGCTGCCGACAACAGTCTTACCACAGTTATCTTTG
Seq C2 exon
CCCACTGTCCAAAGGCAGGAGAGAAAAGATGGTAAATAGGACAGGGGGATGTGGACCTGTTCACAAGTAGTTCTTTGGGGTCATCTCCATTTGTCAGGATACTGGCAGTCCAGTTCAGTAGTGACAGGGTACCAAACAGGAATCAGCAGCAATGGCATGATCCAAAGAAACTGCCAGATCTCTGTTGAATGGACACCAGTCAGCAGGAATACCAGAATCAGCCAGGAGGCCAGGAGAAGTTCTCGGCTGTGCCTCTCTCAATGAATGGAAGATCAATGAAGATGCAAGACCAAGGAAGAGGTGCAAAGTTAGCTATGCAAGCATCATTACCTGCCATTGAATCTAATTTATACTCTCTCCAAACATCACATGTCCTACCACAGGACTTGCCTCGCAAAACACCACATGAGTCTGTATCACCTGACATATCCAGAAATTTCCACTTCAGCAGTTTTCAAAGGTTTACTGGTTCCAAACTTAAAATAAAATACCAAATCTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000096141-'2-5,'2-3,3-5=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.571 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGCCAGTGAGATTCCTACCA
R:
TGGACTGCCAGTATCCTGACA
Band lengths:
145-208
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types