BtaEX0011622 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016784 | DNAH7
Description
Bos taurus dynein, axonemal, heavy chain 7 (DNAH7), mRNA. [Source:RefSeq mRNA;Acc:NM_001143874]
Coordinates
chr2:85001873-85023680:-
Coord C1 exon
chr2:85023618-85023680
Coord A exon
chr2:85006853-85006915
Coord C2 exon
chr2:85001873-85001917
Length
63 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTTTTGCATGTAGGAT
3' ss Score
9.95
5' ss Seq
ACGGTAATT
5' ss Score
7.31
Exon sequences
Seq C1 exon
GATAAACCACCCAGCAAAGAAAAATCCAAGACGCAAGTCAGATTTTTACCACAGTTGTCTACG
Seq A exon
GATAAATCAGCCAGCAAAGAAAAACCTAAGACACCAGGAAGAATTTTACCACAATTGGCTACG
Seq C2 exon
GTGAGTACAAAGCCCCAGTGGCAGCAGGCAGCTCCATCGTTCCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016784_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATAAACCACCCAGCAAAGAAA
R:
ATGGAACGATGGAGCTGCCT
Band lengths:
108-171
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development