MmuEX0015012 @ mm9
Exon Skipping
Gene
ENSMUSG00000041144 | Dnahc7c
Description
dynein, axonemal, heavy chain 7B [Source:MGI Symbol;Acc:MGI:2684953]
Coordinates
chr1:46135368-46140658:+
Coord C1 exon
chr1:46135368-46135430
Coord A exon
chr1:46138280-46138342
Coord C2 exon
chr1:46140550-46140658
Length
63 bp
Sequences
Splice sites
3' ss Seq
CTTTCATGTATTTTATGCAGGAT
3' ss Score
8.96
5' ss Seq
TCGGTAATT
5' ss Score
7.06
Exon sequences
Seq C1 exon
GATAAGCTATCTACTAAAGGCACATCAAAGCCGCCAGCGAGATTCCTACCACAGTTGCCTATG
Seq A exon
GATAAACTATCGAGCAGAGAAAAGGACAAGCTGCCAACAACAGTCCTACCACAGTTAACTTCG
Seq C2 exon
ACAGGAGTCAAGCCCCAGTGGCAGCAGATAGCTCCATCATTCCATTTAAATATGAAACAGGAAAACCCAATTCTAGAACCCTATCCTGTTAAAAATGAGCAGTCGTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041144-'2-3,'2-2,3-3
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.730
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGCGAGATTCCTACCACAG
R:
ACGACTGCTCATTTTTAACAGGA
Band lengths:
136-199
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: