RnoEX6041397 @ rn6
Exon Skipping
Gene
ENSRNOG00000000065 | Pde6b
Description
phosphodiesterase 6B [Source:RGD Symbol;Acc:1311039]
Coordinates
chr14:2332547-2333444:-
Coord C1 exon
chr14:2333335-2333444
Coord A exon
chr14:2333048-2333135
Coord C2 exon
chr14:2332547-2332647
Length
88 bp
Sequences
Splice sites
3' ss Seq
TAAAATAAAATATACAACAGATC
3' ss Score
2.69
5' ss Seq
GAGGTTTGT
5' ss Score
6.36
Exon sequences
Seq C1 exon
ACAGGCAAACTGAAGAGCTATTACACAGACCTAGAGGCCTTCGCCATGGTTACAGCTGGCCTGTGCCACGACATCGACCACCGTGGCACCAACAACCTGTACCAGATGAA
Seq A exon
ATCTCAGAATCCTCTAGCCAAACTACATGGCTCCTCAATTCTGGAAAGGCACCACTTGGAGTTTGGGAAGTTTCTGTTGGCAGAGGAG
Seq C2 exon
AGCCTGAATATCTACCAGAACCTGAACCGGCGGCAGCATGAACATGTGATCCACCTCATGGACATCGCCATCATTGCCACTGACCTGGCCCTCTACTTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000065-'15-20,'15-19,16-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0023314=PDEase_I=FE(14.5=100)
A:
PF0023314=PDEase_I=FE(11.6=100)
C2:
PF0023314=PDEase_I=FE(13.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACAGACCTAGAGGCCTTCG
R:
CCAGGTCAGTGGCAATGATGG
Band lengths:
176-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]