DreEX6057943 @ danRer10
Exon Skipping
Gene
ENSDARG00000000380 | pde6a
Description
phosphodiesterase 6A, cGMP-specific, rod, alpha [Source:ZFIN;Acc:ZDB-GENE-030616-42]
Coordinates
chr14:24719350-24721925:-
Coord C1 exon
chr14:24721816-24721925
Coord A exon
chr14:24719623-24719710
Coord C2 exon
chr14:24719350-24719450
Length
88 bp
Sequences
Splice sites
3' ss Seq
TTCTCTGATTATTTTGACAGATC
3' ss Score
7.79
5' ss Seq
GAGGTAATG
5' ss Score
8.73
Exon sequences
Seq C1 exon
ACAGGTGACCTGAAGCGTTACTATACGGACCTGGAGGCGATGGCGATGGTGACCGCTGGACTCTGTCATGATATTGACCACCGTGGCACTAACAACCTCTACCAGATGAA
Seq A exon
ATCTGGGAATCCACTAGCAAAGCTGCATGGTTCCTCCATTCTCGAGAGGCACCATCTGGAATTTGGAAAAACTCTGCTTAGAGACGAG
Seq C2 exon
GCCTTAAATATCTACCAGAATCTGAACAGAAGACAGCACGAAACCGTCATCCATTTGATGGACATTGCTATCATCGCAACAGACTTGGCCTTGTATTTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000000380-'15-16,'15-15,16-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0023314=PDEase_I=FE(14.5=100),PF0771711=OB_NTP_bind=FE(32.7=100)
A:
PF0023314=PDEase_I=FE(11.6=100),PF0771711=OB_NTP_bind=FE(26.4=100)
C2:
PF0023314=PDEase_I=FE(13.3=100),PF0771711=OB_NTP_bind=FE(30.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTATACGGACCTGGAGGCGAT
R:
GGCCAAGTCTGTTGCGATGAT
Band lengths:
180-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]