RnoEX6044635 @ rn6
Exon Skipping
Gene
ENSRNOG00000028627 | Hmcn1
Description
hemicentin 1 [Source:RGD Symbol;Acc:1564772]
Coordinates
chr13:68003261-68006199:-
Coord C1 exon
chr13:68006068-68006199
Coord A exon
chr13:68005410-68005559
Coord C2 exon
chr13:68003261-68003420
Length
150 bp
Sequences
Splice sites
3' ss Seq
TCTTTATGTCCTTCTTGTAGAAA
3' ss Score
9.9
5' ss Seq
AGGGTATGT
5' ss Score
8.34
Exon sequences
Seq C1 exon
TGCCCCCCACCATTGAAGGGCCTGAAACAGAAGTCATTGTGGAGACAATGAGCAATCCGGTGACATTGACTTGCGATGCCACTGGGATCCCTCCTCCCACCATAACATGGTTAAAGAACCACAAGCCCATAG
Seq A exon
AAAACTCTGACCCCCTTGAGGCTCACATTTTGTCTGGAGGAAGCAAACTGCAAATTGCCCGACTTCAGCGTTCAAACCGTGGAAACTACACGTGTGTTGCATCCAATATGGAGGGAAAGGCTCAGAAAAATTATATCCTTTCCATTCAGG
Seq C2 exon
TCCCTCCAAGTGTTGCCGGTGCGGAAGTTCCAAGTGAAGTTAGTGTCCTTCTTGGGGAAAATGTGGAGCTGGTCTGTGATGCAGATGGCATTCCCATCCCTCGTCTACAGTGGCTTAGAGACGGAAAACCCATAGTGAGTGGTGAAACAGAACGAGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000028627-'75-76,'75-75,76-76=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.378 A=0.078 C2=0.093
Domain overlap (PFAM):
C1:
PF0767911=I-set=PU(46.2=93.3)
A:
PF0767911=I-set=PD(52.7=94.1)
C2:
PF0767911=I-set=PU(52.9=85.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACCATTGAAGGGCCTGAAA
R:
AAGCCACTGTAGACGAGGGAT
Band lengths:
242-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]