RnoEX6044661 @ rn6
Exon Skipping
Gene
ENSRNOG00000028627 | Hmcn1
Description
hemicentin 1 [Source:RGD Symbol;Acc:1564772]
Coordinates
chr13:67816643-67819903:-
Coord C1 exon
chr13:67819790-67819903
Coord A exon
chr13:67818933-67819058
Coord C2 exon
chr13:67816643-67816771
Length
126 bp
Sequences
Splice sites
3' ss Seq
ACCTTTATTCTTTTATCAAGATG
3' ss Score
5.71
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
Exon sequences
Seq C1 exon
ATATTAATGAATGTCAGGAATCCAGCCCCTGCCACCAGCGGTGTTTCAATGTCATAGGAAGTTTCCACTGTGGCTGTGAAGCTGGCTATCAACTCAAAGGCAGAAAGTGCATCG
Seq A exon
ATGTGAACGAATGTAGACAGAGCGTGTGCAGACCAGACCAGCACTGTAAGAACACCCGCGGTGGCTACAAGTGCATTGATCTCTGTCCAAGTGGAATGACCAAGGCTGAGAATGGGACCTGCATTG
Seq C2 exon
ACATTGATGAGTGCAAAGATGGGACCCACCAATGCAGATATAACCAAATATGTGAGAACACGAGAGGCAGCTACCGGTGTGCATGCCCAAGGGGTTATCGGTCTCAAGGAGTTGGAAGACCCTGCGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000028627-'121-122,'121-121,122-122=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=94.9),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=95.3),PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF0764510=EGF_CA=WD(100=95.5),PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATTAATGAATGTCAGGAATCCAGCC
R:
CAACGCAGGGTCTTCCAACTC
Band lengths:
242-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]