RnoEX6046010 @ rn6
Exon Skipping
Gene
ENSRNOG00000007917 | Cd46
Description
CD46 molecule [Source:RGD Symbol;Acc:3061]
Coordinates
chr13:113811496-113814160:-
Coord C1 exon
chr13:113813972-113814160
Coord A exon
chr13:113813217-113813319
Coord C2 exon
chr13:113811496-113811584
Length
103 bp
Sequences
Splice sites
3' ss Seq
TTATTGTTATTTTCTTCTAGAAG
3' ss Score
8.6
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
Exon sequences
Seq C1 exon
ATGCCTGTGAACCACCACCACCATTTGAAGCTATGGAACTCAAGGATAAGCCTAAACCCCATTATGCGATTGGAGAGATAATAGAATATACGTGTAAAAAAGGATACCTATATCTGTCTCCATACCCAATGACTGCTATCTGTCAGCCAAATCACACATGGGTCCCTATTTCAGATCATGGTTGTATTA
Seq A exon
AAGTTCAATGTACTATGTTACAGGACCCTTCGTTTGGCAAAGTACACTACATAGATGGTAGATTTTCATGGGGTGCTCGAGTTAAATATACTTGTATGAATGG
Seq C2 exon
TTATTACATGGTTGGTATGTCAGTTCTACAGTGTGAGCTTAATGGCAACGGTGATGCATTCTGGAATGGCCATCCCCCAAGTTGTAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007917-'6-5,'6-3,8-5=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.008 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=93.8)
A:
PF0008415=Sushi=PU(51.7=88.6)
C2:
PF0008415=Sushi=PD(46.7=90.3)
Main Skipping Isoform:
ENSRNOT00000057151fB2681
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGAACCACCACCACCATT
R:
AGAATGCATCACCGTTGCCAT
Band lengths:
247-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]