RnoEX6051957 @ rn6
Exon Skipping
Gene
ENSRNOG00000021680 | Setdb2
Description
SET domain, bifurcated 2 [Source:RGD Symbol;Acc:2319564]
Coordinates
chr15:39731970-39735166:-
Coord C1 exon
chr15:39735101-39735166
Coord A exon
chr15:39733252-39733270
Coord C2 exon
chr15:39731970-39732066
Length
19 bp
Sequences
Splice sites
3' ss Seq
GTACATAGACGTTCATAAAGGTG
3' ss Score
-1.42
5' ss Seq
GCAGTGAAT
5' ss Score
-2.74
Exon sequences
Seq C1 exon
ACTATGTCCAAGCAATGGTTCTGGTAAACGAAGCAACTCTGAGTAACAGTCAGACACTGGAAAAAG
Seq A exon
GTGAATTCTCAACATAGCA
Seq C2 exon
ATCATACACCTGTGACTCAGAATGAACAGAAAAACAAATCAAATGTGTTTCCCTCTACATCATGTGAAAACCCCTCCCCTGAGGACTGTATCATTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021680-'4-7,'4-6,6-7=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.209 A=0.857 C2=0.611
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAAGCAACTCTGAGTAACAGTCA
R:
AGGGGAGGGGTTTTCACATGA
Band lengths:
118-137
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]