MmuEX6041858 @ mm10
Exon Skipping
Gene
ENSMUSG00000071350 | Setdb2
Description
SET domain, bifurcated 2 [Source:MGI Symbol;Acc:MGI:2685139]
Coordinates
chr14:59423388-59426554:-
Coord C1 exon
chr14:59426489-59426554
Coord A exon
chr14:59424685-59424705
Coord C2 exon
chr14:59423388-59423484
Length
21 bp
Sequences
Splice sites
3' ss Seq
TGTACATACACTCATCATAGAAG
3' ss Score
3.62
5' ss Seq
GCAGTGAGT
5' ss Score
7.39
Exon sequences
Seq C1 exon
ACTATGTCCAAGCAATGAATCTAGTAAATGAAGCCACTCTGAGTAACACGCAAACACTGGAAAAGG
Seq A exon
AAGTGAATACTCATCGTAGCA
Seq C2 exon
ATCATACACCTGTGACTCAGAGTGAACAGGAAAACAAATCAAGTGCGGTTCCCTCTGCATCATGTGACAACTCCTGTCCTAAGGGCTGTACTATCCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000071350_MULTIEX1-2/3=1-3
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.432 A=1.000 C2=0.530
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCACTCTGAGTAACACGCAA
R:
AGTTGTCACATGATGCAGAGGG
Band lengths:
106-127
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types