MmuEX6041858 @ mm9
Exon Skipping
Gene
ENSMUSG00000071350 | Setdb2
Description
SET domain, bifurcated 2 [Source:MGI Symbol;Acc:MGI:2685139]
Coordinates
chr14:60042225-60045391:-
Coord C1 exon
chr14:60045326-60045391
Coord A exon
chr14:60043522-60043542
Coord C2 exon
chr14:60042225-60042321
Length
21 bp
Sequences
Splice sites
3' ss Seq
TGTACATACACTCATCATAGAAG
3' ss Score
3.62
5' ss Seq
GCAGTGAGT
5' ss Score
7.39
Exon sequences
Seq C1 exon
ACTATGTCCAAGCAATGAATCTAGTAAATGAAGCCACTCTGAGTAACACGCAAACACTGGAAAAGG
Seq A exon
AAGTGAATACTCATCGTAGCA
Seq C2 exon
ATCATACACCTGTGACTCAGAGTGAACAGGAAAACAAATCAAGTGCGGTTCCCTCTGCATCATGTGACAACTCCTGTCCTAAGGGCTGTACTATCCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000071350-'5-5,'5-4,7-5=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.447 A=1.000 C2=0.505
Domain overlap (PFAM):
C1:
PF127032=plasmid_Toxin=PD(24.5=56.5)
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCACTCTGAGTAACACGCAA
R:
AGTTGTCACATGATGCAGAGGG
Band lengths:
106-127
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: