HsaEX0057527 @ hg19
Exon Skipping
Gene
ENSG00000136169 | SETDB2
Description
SET domain, bifurcated 2 [Source:HGNC Symbol;Acc:20263]
Coordinates
chr13:50035233-50042096:+
Coord C1 exon
chr13:50035233-50035298
Coord A exon
chr13:50038157-50038192
Coord C2 exon
chr13:50042000-50042096
Length
36 bp
Sequences
Splice sites
3' ss Seq
TTTAATTCCCTGCCTCACAGGAG
3' ss Score
8.17
5' ss Seq
GTGGTGAGA
5' ss Score
5.46
Exon sequences
Seq C1 exon
AATACATCCAAGCAATGATTCTAGTGAATGAAGCAACTATAATTAACAGTTCAACATCAATAAAGG
Seq A exon
GAGCATCACAGAAAGAAGTGAATGCCCAAAGCAGTG
Seq C2 exon
ATCCTATGCCTGTGACTCAGAAGGAACAGGAAAACAAATCCAATGCATTTCCCTCTACATCATGTGAAAACTCCTTTCCAGAAGACTGTACATTTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136169-'5-9,'5-7,7-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.094 A=0.846 C2=0.576
Domain overlap (PFAM):
C1:
PF0109514=Pectinesterase=FE(26.5=100),PF0178512=Closter_coat=FE(29.3=100)
A:
PF0109514=Pectinesterase=FE(14.5=100),PF0178512=Closter_coat=FE(16.0=100)
C2:
NO
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATCCAAGCAATGATTCTAGTGA
R:
TGATGTAGAGGGAAATGCATTGGA
Band lengths:
125-161
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)