RnoEX6054380 @ rn6
Exon Skipping
Gene
ENSRNOG00000018478 | Myo3a
Description
myosin IIIA [Source:RGD Symbol;Acc:1560083]
Coordinates
chr17:89062407-89087296:+
Coord C1 exon
chr17:89062407-89062521
Coord A exon
chr17:89083493-89083619
Coord C2 exon
chr17:89087086-89087296
Length
127 bp
Sequences
Splice sites
3' ss Seq
ATTTCTGTGATGTATTTTAGCAA
3' ss Score
7.81
5' ss Seq
ACTGTGAGT
5' ss Score
7.94
Exon sequences
Seq C1 exon
GTACTTACAAAATGATAACCTCAGAACGGTACAGGACATGATGAACAATAGTTTCTATAAATCCCAGTATGAATTAATTGAACAATGTTTCAAAGTCATAGGTTTTACAATGGAG
Seq A exon
CAACTTGGAAGTGTATATAGTGTGCTCGCAGCCATCTTGAATGTTGGGAACATTGAATTCTCCTCTGTGGCAACTGAATACCAGATGGACAAGAGCTACATCTGCAACCACACGGCTCTGGAAAACT
Seq C2 exon
CCGCTTCTTTGCTTTGCATTCAAGCAGATGAGCTGCAGGAAGCGCTCACCTCACACTGTGTGGTCACTAGAGGAGAAACAATCATACGACCCAACACAGTGGAAAAGGCTACGGATGTCCGAGATGCCACAGCTAAAACTTTATACGGACGTCTCTTTAGCTGGATAGTCAATTGTATTAACAGTTTGCTGAAGCATGACACATCACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018478-'18-21,'18-20,20-21=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.026 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.4=100)
A:
PF0006316=Myosin_head=FE(6.0=100)
C2:
PF0006316=Myosin_head=FE(10.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGGTACAGGACATGATGAACA
R:
TCCAGCTAAAGAGACGTCCGT
Band lengths:
255-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]