GgaEX1038108 @ galGal3
Exon Skipping
Gene
ENSGALG00000007647 | MYO3A
Description
NA
Coordinates
chr2:16249677-16254835:-
Coord C1 exon
chr2:16254721-16254835
Coord A exon
chr2:16251133-16251259
Coord C2 exon
chr2:16249677-16249887
Length
127 bp
Sequences
Splice sites
3' ss Seq
TTTTTTAATATGCTTTCCAGGAA
3' ss Score
8.26
5' ss Seq
ACTGTGAGT
5' ss Score
7.94
Exon sequences
Seq C1 exon
ATATCTGCAAAACGATCATTTCAGAATAGTGCAAGACTTTATGAACAATAGCTTTTATAAGTCGCAGTTTGAATTAATTGAACAGTGCTTCAAAGTCATAGGCTTTACTCTGGAG
Seq A exon
GAACTTGGAAGTGTATACAGTGTTCTGGCTGCCATTCTGAATGTGGGTAACATTGAATTTTCTGCAGTGGTATCTGAACACATGATTGACAAGAGCAACATTTCCAATCCAGTAGCCCTTGAAAACT
Seq C2 exon
GTGCATCCTTGCTGTGTATTCAGGCAGACGAACTGCAAGAGGCCCTCACCTCTCACTGTGTAGTGACTCGAGGAGAAACAATTATTCGTCCCAACACTGTGGAAAAAGCCACTGATGTCAGAGATGCGATGGCCAAAGCTCTCTATGGGCGCCTGTTCAGCTGGATAGTCAATCGCATCAACACTCTTCTCAAACCTGACAAACATTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007647-'14-15,'14-14,15-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.4=100)
A:
PF0006316=Myosin_head=FE(6.0=100)
C2:
PF0006316=Myosin_head=FE(10.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGCAAAACGATCATTTCAGAA
R:
TTTGGCCATCGCATCTCTGAC
Band lengths:
249-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]