BtaEX0023559 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002123 | MYO3A
Description
myosin IIIA [Source:HGNC Symbol;Acc:HGNC:7601]
Coordinates
chr13:26857423-26868879:+
Coord C1 exon
chr13:26857423-26857537
Coord A exon
chr13:26863930-26864056
Coord C2 exon
chr13:26868669-26868879
Length
127 bp
Sequences
Splice sites
3' ss Seq
CTTTCCATGCTGTATTTCAGCAA
3' ss Score
7.43
5' ss Seq
ACTGTGAGT
5' ss Score
7.94
Exon sequences
Seq C1 exon
ATACCTGCAGAATGACCACATCAGAACAATACAGGACATGATGAATAATAGTTTCTATAAATCCCAATATGAATTAATTGAGCAGTGTTTCAAAGTCATCGGTTTTACAATGGAG
Seq A exon
CAACTTGGAAGTATATACAGTATACTGGCTGCAATCTTGAACGTTGGAAACATTGAATTTTCTTCTGTGGCAACTGAACACCAGATTGACAAGAGCCACATTTCGAATCATGCAGCTCTGGAGAACT
Seq C2 exon
CTGCTTCTTTGCTTTGCATTCAAGTAGATGAGCTGCAAGAAGCTCTCACCTCCCACTGTGTGGTCACTAGAGGAGAAACCATCATACGACCCAACACTGTAGAGAAGGCTACTGATGTCAGAGACGCAATGGCTAAAACTTTATATGGACGCTTATTTAGTTGGATAGTCAACCGCATTAATAGCTTACTGAAGCACGAGGCATCACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002123-'14-20,'14-19,15-20
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.4=100)
A:
PF0006316=Myosin_head=FE(6.0=100)
C2:
PF0006316=Myosin_head=FE(10.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTGCAGAATGACCACATCA
R:
GCCATTGCGTCTCTGACATCA
Band lengths:
246-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development