MmuEX6099217 @ mm10
Exon Skipping
Gene
ENSMUSG00000025716 | Myo3a
Description
myosin IIIA [Source:MGI Symbol;Acc:MGI:2183924]
Coordinates
chr2:22362029-22399972:+
Coord C1 exon
chr2:22362029-22362143
Coord A exon
chr2:22396222-22396348
Coord C2 exon
chr2:22399762-22399972
Length
127 bp
Sequences
Splice sites
3' ss Seq
ATTTCTCTGATGTATTTTAGCAA
3' ss Score
7.81
5' ss Seq
ACTGTGAGT
5' ss Score
7.94
Exon sequences
Seq C1 exon
GTACTTACAAAATGACAACCTCAGAACAGTACAGGACATGATGAACAATAGTTTCTATAAATCCCAGTATGAATTAATTGAACAATGTTTCAAAGTCATAGGTTTTACAATGGAG
Seq A exon
CAACTTGGAAGTGTATATAGTGTACTCGCCGCCATCTTGAACGTTGGAAACATTGAATTCTCCTCGGTGGCAACTGAATACCAGATGGACAAGAGCTACATTTGCAATCACACTGCTCTGGAAAACT
Seq C2 exon
CCGCTTCTTTGCTTTGCATTCAAGCAGATGAGCTGCAGGAAGCTCTCACCTCACACTGTGTGGTCACTAGAGGAGAAACAATTATTCGACCCAACACAGTGGAAAAGGCTGCTGATGTCCGAGATGCCATGGCCAAAACTTTATATGGCCGTCTCTTTAGCTGGATAGTCAATTGTATTAACAGCTTGCTGAAGCATGACACATCACCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025716-'19-25,'19-17,20-25=AN
Average complexity
A_C1
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.026 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.4=100)
A:
PF0006316=Myosin_head=FE(10.1=100)
C2:
PF0006316=Myosin_head=FE(10.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACAACCTCAGAACAGTACAGG
R:
AGTTTTGGCCATGGCATCTCG
Band lengths:
243-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types