HsaEX0041169 @ hg38
Exon Skipping
Gene
ENSG00000095777 | MYO3A
Description
myosin IIIA [Source:HGNC Symbol;Acc:HGNC:7601]
Coordinates
chr10:26096568-26125608:+
Coord C1 exon
chr10:26096568-26096682
Coord A exon
chr10:26120676-26120802
Coord C2 exon
chr10:26125398-26125608
Length
127 bp
Sequences
Splice sites
3' ss Seq
GTTTCTGTGGTGTGTTTCAGCAA
3' ss Score
8.89
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
Exon sequences
Seq C1 exon
GTACCTACAAAATGACCACCTCAGAACAGTACAAGACATCATGAATAATAGTTTCTATAAATCCCAGTATGAATTAATTGAGCAATGTTTCAAAGTCATAGGTTTTACAATGGAG
Seq A exon
CAACTTGGTAGTATATACAGCATACTCGCTGCAATCTTGAATGTTGGCAACATTGAATTTTCTTCTGTGGCAACTGAACACCAGATTGACAAGAGCCACATTTCTAATCATACAGCCCTGGAGAACT
Seq C2 exon
GTGCTTCTTTGCTTTGCATTCGGGCAGATGAGCTACAAGAAGCTCTCACCTCCCACTGTGTGGTCACTAGAGGAGAAACAATTATACGACCCAATACTGTAGAAAAAGCTACCGATGTCAGGGATGCCATGGCTAAAACTTTATATGGACGTCTCTTTAGTTGGATAGTCAATTGCATTAACAGTTTGTTGAAGCATGACTCATCACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000095777_MULTIEX2-1/18=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.029 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(14.9=100)
A:
PF0006316=Myosin_head=FE(10.0=100)
C2:
PF0006316=Myosin_head=FE(10.0=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACCACCTCAGAACAGTACA
R:
AGTTTTAGCCATGGCATCCCTG
Band lengths:
243-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Autistic and control brains
- Pre-implantation embryo development