DreEX0048681 @ danRer10
Exon Skipping
Gene
ENSDARG00000010186 | myo3a
Description
myosin IIIA [Source:ZFIN;Acc:ZDB-GENE-041026-4]
Coordinates
chr24:6177123-6184108:-
Coord C1 exon
chr24:6183994-6184108
Coord A exon
chr24:6178886-6179012
Coord C2 exon
chr24:6177123-6177333
Length
127 bp
Sequences
Splice sites
3' ss Seq
TGTGTGTCTTTATTTATTAGGAG
3' ss Score
8.78
5' ss Seq
GTGGTAAGA
5' ss Score
8.24
Exon sequences
Seq C1 exon
GTATCTCCACAATGAGAATGTTAAATTAGTGCCTGACATTGTGGGCAATGCCTTCTATAAGGAGCAGTTTGAGACTGTGGAGCAGTGCTTCAAAGTCATCGGCTTCACCCTAGAG
Seq A exon
GAGCTCGGGAGTGTTTACGGCATCTTAGCTGGGATCCTGAATACAGGAGACGTCGAGTTCACGTCAGTGGCTTCAGAACATCAAACGGACAAAAGCAACATTTCCAACATGGCAGTACTAGAGAGTG
Seq C2 exon
CTGCATCGCTGCTGTGTATCCGTGCAGATGAGCTACAGGAGGCTCTGACATCTCATTGTGTGGTCACTCGGGGTGAAACCATCGTCAGGTCAAACACAGTGGAGAAGGCCACAGAGGTGCGGGACGCCATGGGTAAAGCCCTATATGGACGCCTGTTCAGCTGGATTGTCAACCGCATCAACTCTCTGCTCAAACCAGACAACCAATCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000010186-'20-18,'20-17,23-18
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.014
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.1=100)
A:
PF0006316=Myosin_head=FE(5.7=100)
C2:
PF0006316=Myosin_head=FE(9.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTAGTGCCTGACATTGTGGGC
R:
ACAGGCGTCCATATAGGGCTT
Band lengths:
246-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]