RnoEX6056288 @ rn6
Exon Skipping
Gene
ENSRNOG00000016483 | Myo16
Description
myosin XVI [Source:RGD Symbol;Acc:621561]
Coordinates
chr16:84640781-84650879:-
Coord C1 exon
chr16:84650651-84650879
Coord A exon
chr16:84648682-84648950
Coord C2 exon
chr16:84640781-84642076
Length
269 bp
Sequences
Splice sites
3' ss Seq
GTGTTCTCTTTTCCCTTAAGAGC
3' ss Score
7.89
5' ss Seq
AAGGTTAGC
5' ss Score
5.61
Exon sequences
Seq C1 exon
TTATAAGAGGGTTTCTAGCCCGCCAGCACTTACTTCAGAGAATGAGCATCAAGCAGCAAGAGGTTACATCCATCAAGAGCTTCTTACAGAGCACAGAGGACATGGCACTGAAAACCTATGATGCCCTGGTTATTCAGAACGCTTCTGACATTGCCCGGGAACATGATAGGCTCCGGAAGGAGGTCCATGCTGCCTACCACAGGAACAGACAAGAGGAAGGAACCAAGAG
Seq A exon
AGCTGAAGACCAGGGAGGATGCCGGCATGCCCATTCCAACTCGGTTCCCGTGCCCATGGCAGTGGACAGCCTTGCCCAGGCTCTCGCCGGCCCGTCCAGTCGGTCCCCATCACTGCACTCTGTGTTCAGCATGGATGACAGCACTGGCCTCCCGTCACCACGGAAACAGCCTCCACCCAAGCCAAAGAGGGACCCCAACACCCGGCTGAGTGCCTCCTATGAGGCTGTGAGCGCCTGCCTTTCGGCCACCAAGGATGCAGCCAGCGAAG
Seq C2 exon
CTCTGACACGGCCCAGACCCCACAGTGATGATTACAGTACCATGAAGAAAATTCCCCCTCGGAAGCCAAAGAGAAGTCCCCACACGAAGCTCAGTGGCTCTTATGAGGAGATCTGGGGACCGAGGCCTTCTGGTACAATGGGCCAGGTGGGCAAACATCATGCCCCAGGGACACTGGGTGTGCAGTGGGCCAGTCCTGACTCCATGCCACAGTGCACACCCCAGCTGCCTCTGCACCTGCCATTGCCACAGGGTGACTATGACGATGACGGCGAGCCTGTGTATATCGAGATGGTAGGGAACGCAGCCAGGGCAGGCGGATCTGAGACTGACAGCCCTGACCAGGGCGAGTCTGTGTATGAGGAGATGAAGTACGTCTTGCCTGAGGAGGGCTGTGGTCCAGGGATGCTCACCTTCCTGCCTGCCTCGCCACCTCTGTTTTTAGAGACCCGAAAAGCCATCATCTTGGAGGCTGGAGAGGGGAGCTGCCAGCCCCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016483-'33-37,'33-36,34-37=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.299 A=0.956 C2=0.852
Domain overlap (PFAM):
C1:
PF0061222=IQ=PD(52.4=14.3),PF154391=NYAP_N=PU(6.5=32.5)
A:
PF154391=NYAP_N=FE(23.3=100)
C2:
PF154391=NYAP_N=PD(69.9=62.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGCCAGCACTTACTTCAGAG
R:
CGTGTGGGGACTTCTCTTTGG
Band lengths:
296-565
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]