GgaEX7001177 @ galGal4
Exon Skipping
Gene
ENSGALG00000016837 | MYO16
Description
myosin XVI [Source:HGNC Symbol;Acc:HGNC:29822]
Coordinates
chr1:137688860-137694297:+
Coord C1 exon
chr1:137688860-137689106
Coord A exon
chr1:137690973-137691280
Coord C2 exon
chr1:137693095-137694297
Length
308 bp
Sequences
Splice sites
3' ss Seq
TGTCTTCCGTGCTTTTTCAGAGC
3' ss Score
11.82
5' ss Seq
AAGGTCAGG
5' ss Score
6.23
Exon sequences
Seq C1 exon
TTGTGAGAGGATTTCTAGCTCGCCAGCGTGTGCTACAGAAGATGAGCATCAAACAGCAAGAGATCACCTCAGTCAAAGGCTTCTTGCAGAATGTTGAGGATATGGGGCTGAAAACATACGATGCCTTGGTCATTCAAAATGCTTCTGACATTGCTCGGGAAAATGACCGAATTCGCAATGAGATGAATGCTGCTTACCACAGGGAAAAGCTAGAGGCTAGAAATAGACCAGAAGAAGTCCACAAAAG
Seq A exon
AGCTGAAGACAAGGGTGGGAAGCTCCCCGAGGACGGCTTTGCTGGCTACCGTGCGCCGAAGCACTTTCACTCCAGCTCCGTGCCCGTCCCCATGGCTGTGGAAGGCTTGGTACATTCTGCGGCTGGGTCGTCCATCAGGTCCCCATCCCTGCACTCAGTGTTCAGCATGGAAGACAACAGCAGCCTGCCGTCGCCACGGAAACAGCCTCCTCCCAAACCCAAGCGGGACCCCAACACACGGCTGAGCGCTTCCTATGAGGCTGTCAGTGCTTGCTTGTCGGCGGCTTCTAAGGAGGCCGCTAATGAAG
Seq C2 exon
TTCTGACCCGTCCAAGGCCACACAGTGATGACTATAGTACCATGAAAAAAATACCTCCCAGAAAACCAAAACGAAGTCCCAATACAAAACTCAGTGGCTCTTATGAAGAAATACCTGGCCAAAAGCCTGGGGATGTGAAACAGGCAAACACAGTAGCCAAACAAGGTAGCTATGACACTGCGGGAGTACAGAGAGCAGCTTCTGCTGATGTGCCACAACATGGCACATTGAGTCTTTATATGTCACAAGAAGAGGAAGAAAATGAACCTGTCTATATTGAAATGGTAGGGAATGCAATGAAACACAGTTCTGCTGAAGCAGAAAGCCCAGAGCAAGGAGAGTCTGTATATGAAGAAATGAAGTATTTTCTCCCAGAAGAAGGAATCAACAGTAATGGAATAATTCCAGTAGCAACTGGATCTCCTCCTCTGGTGTTTGAAAGCAAAAAAAATGTTCATGTTGAAGATGGAACATTGGATGGAAACAGTCAAGCAGCTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016837-'36-44,'36-43,37-44=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.337 A=0.913 C2=0.858
Domain overlap (PFAM):
C1:
PF0061222=IQ=PD(52.4=13.3),PF154391=NYAP_N=PU(7.6=37.3)
A:
PF154391=NYAP_N=FE(25.2=100)
C2:
PF154391=NYAP_N=PD(66.9=67.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGCTGAAAACATACGATGCC
R:
AAGCTGCTCTCTGTACTCCCG
Band lengths:
344-652
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]