BtaEX6057358 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018237 | MYO16
Description
myosin XVI [Source:HGNC Symbol;Acc:HGNC:29822]
Coordinates
chr12:88241046-88256314:+
Coord C1 exon
chr12:88241046-88241292
Coord A exon
chr12:88243948-88244219
Coord C2 exon
chr12:88256159-88256314
Length
272 bp
Sequences
Splice sites
3' ss Seq
TGTTCATTCTCTCCCCACAGAGC
3' ss Score
12.91
5' ss Seq
AAGGTTAGC
5' ss Score
5.61
Exon sequences
Seq C1 exon
TGGTCAGAGGATTTTTAGCCCGCCAGCACTTGCATCAGAAAAGGAGCATACGGCAGCAGGAGGTCACATCCATCAACAGCTTCCTGCAGGTCACAGAGGACCTGGGGCTGAAGACCTATGACGCCCTGGTTGTTCAGAACGCCTCGGACATCGCCCGCGAGAATGACCGGCTTCGGAACGAGATGAACGCTGCTTTCCACAGAGAGAAGTTGGAGGCCAGGGGCAAGCAGGAGGAAGGCTCCAAAAG
Seq A exon
AGCTGAAGACAAGAGCAGACCGAGGCGTCTCCACTGTAGCTCCATCTCAGTCCCCGCAGCAGTGGACGGCCTGACCCAGTCCCTGGCCGGTCCGCCCTCCAGGCCCCCTTCTCTGCACTCGGTGTTCAGCCTGGATGACGGCAGCGGCCTCCCGTCGCCACGGAAACAGCCTCCGCCCAAGCCAAAGAGGGACCCAGCCACGCGGCTGAGCGCCTCCTACGAGGCTGTGAGCGCCTGCCTATGGGCTGCAGCGAGGGACTCGGCGAATGAAG
Seq C2 exon
CTCTCACCCGGCCCCGGCCGCACAGCGACGACTACAGCACCATGAAGAAGGTCCCCCCTCGGAAGCCCAAGCGAAGCCCCCACACCAAGCTCAGCGGTTCCTCGGAGGAGATCTCGGGCGCCCGGCCAGGGGCGGCAGGGCCCGGGGGCGCGAGGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018237-'44-43,'44-41,45-43=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.386 A=0.793 C2=1.000
Domain overlap (PFAM):
C1:
PF0061222=IQ=PD(52.4=13.3),PF154391=NYAP_N=PU(7.8=37.3)
A:
PF154391=NYAP_N=FE(23.0=100)
C2:
PF154391=NYAP_N=FE(13.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTTTTAGCCCGCCAGCACTT
R:
GGGACCTTCTTCATGGTGCTG
Band lengths:
292-564
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]