MmuEX0030441 @ mm9
Exon Skipping
Gene
ENSMUSG00000039057 | Myo16
Description
myosin XVI [Source:MGI Symbol;Acc:MGI:2685951]
Coordinates
chr8:10560124-10570270:+
Coord C1 exon
chr8:10560124-10560352
Coord A exon
chr8:10562049-10562317
Coord C2 exon
chr8:10569412-10570270
Length
269 bp
Sequences
Splice sites
3' ss Seq
GTGTTTTGTTTTCCCTTAAGAGC
3' ss Score
7.11
5' ss Seq
AAGGTTAGC
5' ss Score
5.61
Exon sequences
Seq C1 exon
TTATAAGAGGATTTCTGGCACGCCAGCACTTACTTCAGAGAATGAGCATCAAGCAACAAGAGGTTACATCCATCAAGAGCTTCTTACAGAGCACAGAGGACATGGCACTGAAAACCTATGATGCCCTGGTCATTCAGAACGCTTCCGATATCGCCCGGGAACACGACAGGCTCCGGAAGGAGGTCCACACTGCCTACCACAGGAACAGACAAGAGGAAGGAACCAAGAG
Seq A exon
AGCTGAAGACCAAGGAGGATGCAGGCACGTCCACTCCAACTCCGTGCCGGTGCCCATGGTAGTAGACAGCCTCGCCCAGGCTCTCACCGGACCATCTACCCGGCCCCCATCATTGCACTCTGTGTTCAGCATGGATGACAGCACTGGCCTCCCATCACCACGGAAACAGCCTCCACCCAAGCCAAAGAGGGACCCCAACACCCGGCTGAGTGCCTCCTATGAGGCTGTGAGCGCCTGCCTTTCAGCTGCCAAGGATGCAGCCGGTGAAG
Seq C2 exon
CTCTGACACGGCCCAGACCCCACAGTGATGACTATAGCACCATGAAGAAGATTCCCCCTCGGAAGCCAAAGAGAAGTCCCCACACGAAGCTCAGTGGCTCTTATGAGGAGATCTGGGGACCACCACGACCTTCTGGCACCATGGGCCAGGGGGGCAGGCATCAGGCCCCAGGGACACTGAGTGTGCAGTGGGCCAGGCCTGACTCAGTGCCGCAGTGCACACCACAGCTGCCTCTGCACCTGCCATTGCCACAGGGCGACTATGACGATGATGCTGAGCCTGTGTACATCGAGATGGTGGGGAATGCAGCCAGGGCAGGTGGATCTGAGACCGACAGCCCTGACCAGGGCGAGTCTGTGTATGAGGAGATGAAGTACATCTTGCCAGAGGAGGGCTGTGGCCTAGGGATGCTCACCTTCCTGCCTGCCTCACCTCCTTTGTTTTTAGAGACTCGAAAAGCCATCATCTTGGAGGCTGCTGAGGGGAACTGCCAGCCCTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039057-'30-31,'30-30,31-31
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.299 A=0.967 C2=0.823
Domain overlap (PFAM):
C1:
PF0061222=IQ=PD(52.4=14.3),PF154391=NYAP_N=PU(6.5=32.5)
A:
PF154391=NYAP_N=FE(23.3=100)
C2:
PF154391=NYAP_N=PD(70.0=94.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACGCCAGCACTTACTTCAGA
R:
CGTGTGGGGACTTCTCTTTGG
Band lengths:
297-566
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: