DreEX6035104 @ danRer10
Exon Skipping
Gene
ENSDARG00000078582 | myo16
Description
myosin XVI [Source:ZFIN;Acc:ZDB-GENE-070912-470]
Coordinates
chr9:8135878-8144510:+
Coord C1 exon
chr9:8135878-8136124
Coord A exon
chr9:8142606-8142976
Coord C2 exon
chr9:8143344-8144510
Length
371 bp
Sequences
Splice sites
3' ss Seq
TTGTTCATTCTTTTGTTTAGGGT
3' ss Score
9.11
5' ss Seq
ATTGTATGT
5' ss Score
4.34
Exon sequences
Seq C1 exon
TAATGCGTGGCTGGTTGGCCAGACAGCAGGTGCGTCGCAGGCTCACTTCTAGGAAACAGGAGCTCTGCAATGTCCAGCGGTTCCTGCAAGGAGCTGAGGACTTGGGTTTGCGCACTTATGACAACCTGGTCATTCAAAACGCAGCCGATATTGCTAGAGAGAACGACCGCCTGCGGGGTCACATCAGTGCTCCACCACTGGGAGAGCGACCAGAACCTGTGGGCAAAGAAGAAGATTCGCCTAAAAG
Seq A exon
GGTTGTTGAAAAAAGTGGGAGAGGTAATGATGTGGCCAACCGTGGGGGGAACCGACCAATTCGGCATTTTCGCTCCAGCTCTGTGCCTCTACCCCTGGTAATGGACAGCTTGGTACACTCCAGCATTGGGGCATCAATCAAAGCAGCCCTTCAGCCTACACCACATTCCACTGATGAAGGCAATGGAGGAAGCCTTTCCTCTCCACGAAAACAACCTCCTCCCAAACCCAAACGAGACCCTAATACACGTCTGAGTGCATCATATGAGGCAGTGAGTGCAGGCCTGAGTATTGCACCCAAAGACAGCCCTGCTGAGGGTCAAGCCTCTCCGTCGGGAAGCCCACCAAACACCCAGCTATCTCCTTCTGATT
Seq C2 exon
CTCTAGCTAAACCACGCCCTCACAGTGATGACTACAGCACCATGAAGAAGATCCCACCCCCTAAACCCAAACGCAGCCCTAATACCAAACTAACAGGTTCCTATGAGGAGATCTCTGTACCCTCCCCTGCACGCCCCACTGACATGAAACTCGTCAGCCTTGTACGAGGCGGCCACTGCTTGGGGCTTATCCAGCGAGCAGCATCTGCAGATGGCCCCCATTCTTCTGTGCTTAGTCTCTACCCCTGCCAGGATGAGGAGGATGTGTATATTGAGATGGTAGGGGCTTCACGGGCCCTTAGTCTCGCCGACACTCATAGCCCAGAACCAGGCGAGGCAGTTTACGAAGAGATGAAATACTTCCCAAATGACGAGATAGTGTCAACTCCAGTGGTGAAGCCTGAAGCCGTCAATCCCACTCCACTACCTGCCCCAGTGCTAGAAATTAAGAGGCCTGTGACCCTGATTGAGCAGTCAGGCACACTTGGAGGAAAGCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000078582-'38-43,'38-42,40-43=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.343 A=0.933 C2=0.795
Domain overlap (PFAM):
C1:
PF0061222=IQ=PD(52.4=13.3),PF154391=NYAP_N=PU(7.0=37.3)
A:
PF154391=NYAP_N=FE(28.0=100)
C2:
PF154391=NYAP_N=PD(64.8=73.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGTCATTCAAAACGCAGCC
R:
CACAGAAGAATGGGGGCCATC
Band lengths:
352-723
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]