RnoEX6056904 @ rn6
Exon Skipping
Gene
ENSRNOG00000061038 | Myh15
Description
myosin, heavy chain 15 [Source:RGD Symbol;Acc:1565858]
Coordinates
chr11:54234156-54240754:-
Coord C1 exon
chr11:54240405-54240754
Coord A exon
chr11:54236894-54237018
Coord C2 exon
chr11:54234156-54234271
Length
125 bp
Sequences
Splice sites
3' ss Seq
CCTAATCTTCCTCCTTTCAGAAC
3' ss Score
10.41
5' ss Seq
GAGGTAGAT
5' ss Score
6.04
Exon sequences
Seq C1 exon
GAAGAAGCTGGCGATTCGATTGCAGGAGGCCGCTGAAGCCATGGAGGTGTCCAATGCCAAGAATGCCTCCCTGGAGAGGGCCAGGCACAGGCTCCAGCTGGAGCTGGGGGATGCCCTTTCTGACCTGGGAAAGGCTCGCTCTGTGGCAGCAGCATTGGGGCAAAAACAGCAGCACTCTGACAAGGCTCTGGCTTCCTGGAAGCAGAAGCAGGAAGAGGCCCAGGAGCTGCTGCAGGCCTCTCAGAAGGAGGCCCGAGCTCTCAGCTCTGAGGTCCTCATGCTCAGGCAAGCCTGTGAGGAGAGCAACGAGGCCCAGGAGACCCTGAAGAGGCAGAACCAGGACCTTCAGG
Seq A exon
AACGGATTTGTTGTCTCACAAACCAGGTGAGAGAAGGGATCAAGAATTTGACTGAAGTGGAAAAGGCCAAGAAATTGATTGAGCAAGAGAAGACTGAAATCCAAGCGAGGCTGGAAGAAGCAGAG
Seq C2 exon
GGAGCTCTGGAACGGAATGAAAGCAAGATCCTTCGTTTCCAGCTGGACCTCTCAGAGGCTAAAGCAGAGCTGGGAAGAAAGCTGTCAGAGAAAGAGGATGAAGCAGGGAGGTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000061038-'38-39,'38-38,39-39=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.381 A=0.167 C2=0.410
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(13.7=100)
A:
PF0157614=Myosin_tail_1=FE(4.8=100)
C2:
PF0157614=Myosin_tail_1=FE(4.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCACTCTGACAAGGCTCTG
R:
CTTCCCAGCTCTGCTTTAGCC
Band lengths:
258-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]