BtaEX0023440 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018399 | MYH15
Description
myosin, heavy chain 15 [Source:HGNC Symbol;Acc:HGNC:31073]
Coordinates
chr1:53554718-53560426:-
Coord C1 exon
chr1:53560077-53560426
Coord A exon
chr1:53557850-53557974
Coord C2 exon
chr1:53554718-53554833
Length
125 bp
Sequences
Splice sites
3' ss Seq
TGTCTTTCTTTCCTCCCCAGAGG
3' ss Score
11.65
5' ss Seq
GAGGTATTA
5' ss Score
6.46
Exon sequences
Seq C1 exon
GAAGAAGCTGGCACTTCGGTTGCAGGAGGCTGCGGAAGCCATGGGGGTGGCCAATGCCAGAAACGCCTCCCTGGAGAGGGCCAGGCTCCGACTGCAGCTTGAGCTCGGGGACACCCTGTCTGATCTCGGGCAGGCGCGGTCTGCGGCTGCCGCACTCAACCAGAAGCAGCAGCATTTTGACAAGAGCCTGGACGACTGGAGGCGGAAGCACGAGGAGTCCCAGGCGATGCTGGATGCCGCAAAAAAGGAGGCCCGCGCCCTCAGCATCCAGCTCCTGGAGCTCAGGCACAGCTACGAGGAGGGCACCATGAGCCAGGAGGCCCTGCGGAGGGAGAATAAGCACCTGAAAG
Seq A exon
AGGAGATTTCTAATCTGACAAATCAGGTGAGAGAAGGAAAGAAGAACTTAAGTAAAATGGAAAAGGTCAAGAAACAGATTGAACAAGAAAAGAATGAAGTTCAGATGGCATTGGAAGAGGCTGAG
Seq C2 exon
GGAGCTCTGGAGCGTAATGAAAGCAAGGTTCTTCGTTTGCAGCTTGAACTCTCAGACACTAAAGCGGAACTTGAAAGGAAGCTTTCAGAGAAAGATGAAGAAATAGAAAATTTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018399_MULTIEX1-8/8=7-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.390 A=1.000 C2=0.308
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(13.6=100),PF048997=MbeD_MobD=WD(100=46.6)
A:
PF0157614=Myosin_tail_1=FE(4.8=100)
C2:
PF0157614=Myosin_tail_1=FE(4.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGACAAGAGCCTGGACGACT
R:
AGCTTCCTTTCAAGTTCCGCT
Band lengths:
257-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development