MmuEX6062737 @ mm10
Exon Skipping
Gene
ENSMUSG00000092009 | Myh15
Description
myosin, heavy chain 15 [Source:MGI Symbol;Acc:MGI:3643515]
Coordinates
chr16:49159659-49165901:+
Coord C1 exon
chr16:49159659-49160008
Coord A exon
chr16:49163016-49163140
Coord C2 exon
chr16:49165786-49165901
Length
125 bp
Sequences
Splice sites
3' ss Seq
CTTGATCTTCCTTCTTTCAGAAC
3' ss Score
10.6
5' ss Seq
GAGGTAGAT
5' ss Score
6.04
Exon sequences
Seq C1 exon
GAAGAAGCTGGCGATTCGATTGCAGGAGGCTGCAGAAGCCATGGAGGTGTCCAATGCCAAGAATGCCTCCCTGGAGCGGGCCAGGCACAGGCTCCAGCTGGAGCTGGGGGATGCCCTTTCTGACCTGGGGAAGGCTCGCTCTGTGGCAGCGGCTCTGGGGCAGAAACAGCAGCACTCTGACAAGGCACTGACTTCCTGGAAGCAGAAGCTGGACGAGACCCAAGAGCTGCTGCAGGCTTCTCAGAAGGAGACCCGGGCCCTCAGCTCTGAGGTCCTCACCTTCAGGCAAGCCTGTGAGGAGAGCACCGAGGCACAGGAGACCTTGAAGAGGCAGAACCAGGACCTTCAGG
Seq A exon
AACAGATTTGTAGTCTCACAAACCAGGTGAGAGAAGGGATCAAGAATTTGGCTGAAGTGGAAAAGGCCAAGAAGTTGATTGAACAAGAGAAGACTGAAGTCCAAGTGAGGCTGGAAGAAACAGAG
Seq C2 exon
GGAGCTCTGGAACGGAATGAAAGCAAGATCCTTCGTTTCCAGCTCGAACTCTCAGAGGCGAAGGCAGAGCTGGAAAGGAAGCTGTCGGAGAAAGAGGAAGAAGCAGAGAGGCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000092009-'29-38,'29-37,34-38=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.373 A=0.143 C2=0.410
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(13.6=100)
A:
PF0157614=Myosin_tail_1=FE(4.8=100)
C2:
PF0157614=Myosin_tail_1=FE(4.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGAAACAGCAGCACTCTGA
R:
CCTCTGAGAGTTCGAGCTGGA
Band lengths:
249-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types