GgaEX0022522 @ galGal3

Exon Skipping

Gene

ENSGALG00000015358 | Q91377_CHICK

Description

NA

Coordinates

chr1:90785470-90789056:-

Coord C1 exon

chr1:90788707-90789056

Coord A exon

chr1:90787840-90787964

Coord C2 exon

chr1:90785470-90785585

Length

125 bp

Sequences

Splice sites

3' ss Seq

TTATTATTTGTTTGTTTCAGAGG

3' ss Score

10.01

5' ss Seq

GAGGTAAGG

5' ss Score

10.28

Exon sequences

Seq C1 exon

AAAAAAGCTTGCTGCCCGCCTGCAAGAAGCTGAGGAAGCAATTGAAGCTGCCAACGCCAAGTGCTCTTCTCTGGAAAAGACAAAGCACAGGCTGCAGAACGAGCTGGAAGATATGATGATTGATCTGGAAAAGGCCAACTCAGCGGCTGCCTCCCTGGACAAGAAGCAGCGTGGCTTTGACAAGATCATCAATGACTGGAAGCAGAAGTATGAAGAGTCACAGGCTGAGCTGGAAGCTTCCCAGAAGGAGGCCCGCAGCCTCAGCACCGAGCTCTTCAAGCTGAAGAATGCCTATGAAGAGACACTGGACCATCTGGAGACTCTGAAACGGGAAAACAAGAACCTCCAAG

Seq A exon

AGGAAATTTCTGATCTGACCAATCAGATCAGTGAAGGAAACAAGAACCTCCATGAGATAGAAAAAGTCAAGAAGCAGGTAGAACAAGAAAAGTCAGAGGTTCAGCTAGCTCTGGAAGAAGCAGAG

Seq C2 exon

GGAGCTTTGGAGCATGAAGAAAGCAAGACCCTTCGTTTTCAGCTTGAGCTTTCTCAGCTTAAAGCTGATTTTGAAAGGAAGCTGGCAGAAAAGGATGAAGAAATGGAAAATATAAG

VastDB Features

Vast-tools module Information

Secondary ID

ENSGALG00000015358-'36-36,'36-35,37-36

Average complexity

S

Mappability confidence:

100%=100=100%

Protein Impact

ORF disruption upon sequence exclusion

No structure available

Features

Disorder rate (Iupred):

C1=0.508 A=0.905 C2=0.590

Domain overlap (PFAM):

C1:

PF0157614=Myosin_tail_1=FE(13.6=100),PF0003816=Filament=FE(38.9=100),PF131661=AAA_13=PD(52.9=84.7),PF078897=DUF1664=PD(79.5=52.5),PF045827=Reo_sigmaC=PU(62.8=87.3)

A:

PF0157614=Myosin_tail_1=FE(4.8=100),PF0003816=Filament=FE(13.6=100),PF045827=Reo_sigmaC=FE(25.0=100)

C2:

PF0157614=Myosin_tail_1=FE(4.4=100),PF0003816=Filament=PD(10.0=76.9),PF045827=Reo_sigmaC=PD(11.0=46.2)

Main Inclusion Isoform:

ENSGALP00000024742