RnoEX6061809 @ rn6
Exon Skipping
Gene
ENSRNOG00000052795 | Itpr3
Description
inositol 1,4,5-trisphosphate receptor, type 3 [Source:RGD Symbol;Acc:2934]
Coordinates
chr20:5699918-5700825:+
Coord C1 exon
chr20:5699918-5700038
Coord A exon
chr20:5700331-5700521
Coord C2 exon
chr20:5700677-5700825
Length
191 bp
Sequences
Splice sites
3' ss Seq
AGCGCTGCCCTCTCTTGCAGCCA
3' ss Score
10.23
5' ss Seq
CAGGTAGGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
ACGCATCAGACAATTGTGGTTCAGCTGCTGCAGTCCACCACCCGGCTGCTCGAGTGTCCTTGGCTGCAGCAGCAGCACAAGGGCTCGGTGGAGGCCTGTGTCCGCACCCTCGCCATGGTGG
Seq A exon
CCAAGAGTAGAGCCATCTTGCTGCCGATGGATCTGGATGCCCACATGAGCGCTCTGCTCAGCAGTGGGGGCAGCTGCTCAGCCGCGGCCCAACGCAGCGCTGCCAACTACAAGACGGCCACGAGGACCTTCCCTCGGGTCATCCCCACCGCCAACCAGTGGGACTACAAGAACATCATTGAGAAGTTACAG
Seq C2 exon
GACATCATCACGGCCCTAGAAGAGCGGCTGAAGCCTCTGGTGCAGGCCGAGCTCTCGGTGCTGGTGGACATGCTGCACTGGCCCGAGCTGCTCTTTCTAGAGGGCAGTGAGGCCTACCAGCGCTGCGAGAGTGGCGGCTTCCTGTCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000052795-'43-48,'43-47,44-48=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAATTGTGGTTCAGCTGCTGC
R:
GACAGGAAGCCGCCACTCTC
Band lengths:
257-448
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]