DreEX6049560 @ danRer10
Exon Skipping
Gene
ENSDARG00000061741 | itpr3
Description
inositol 1,4,5-trisphosphate receptor, type 3 [Source:ZFIN;Acc:ZDB-GENE-070605-1]
Coordinates
chr8:21290071-21292279:+
Coord C1 exon
chr8:21290071-21290191
Coord A exon
chr8:21290318-21290499
Coord C2 exon
chr8:21292131-21292279
Length
182 bp
Sequences
Splice sites
3' ss Seq
TTTTCTGACTGTCCACAAAGCCA
3' ss Score
3.96
5' ss Seq
CAGGTATTT
5' ss Score
7.51
Exon sequences
Seq C1 exon
GCTCATCACACCACTGTAAAGCAGCTGCTGCAGTCCACCATGCGTCTGTTAGACTGTCCATGGCTACAGCCACAGCAAAAAGTCCAAGTGGAGTCCTGCATCCGAACACTAGCAGTGACAA
Seq A exon
CCAAGAGTCGCTCTATTCCTCTGCCAGTGGAGTTGGAGGCTCATGTCAACATGATGTTGAGTCACAGTAATTCCCTCACATTGTCCCGATCCAGTCACTCCAACAAAAGCATGTCACGCTTAACACGGCCTGCCGCTCCCACCAACCCCTGGGACTACAAGAACATCATTGAAAAACTACAG
Seq C2 exon
GATATCATTAACACACTGGAGGAGCGTGTGATGCCTTTGGTGAATGCGGAGCTGTCTGTGCTGGTGGATGTGCTGCATCAGCCTGAGCTGCTGTTTCTGGAAGGCACCGATGCTCGCTCACGCTGTGAATCAGGAGGATTTATTTCTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061741-'40-43,'40-42,41-43=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.073 A=0.279 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCATCACACCACTGTAAAGC
R:
CCTCCTGATTCACAGCGTGAG
Band lengths:
258-440
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]