HsaEX6046690 @ hg38
Exon Skipping
Gene
ENSG00000096433 | ITPR3
Description
inositol 1,4,5-trisphosphate receptor type 3 [Source:HGNC Symbol;Acc:HGNC:6182]
Coordinates
chr6:33682524-33684168:+
Coord C1 exon
chr6:33682524-33682644
Coord A exon
chr6:33683207-33683397
Coord C2 exon
chr6:33684020-33684168
Length
191 bp
Sequences
Splice sites
3' ss Seq
CTCCCTCCCTTCCCACCCAGCCA
3' ss Score
7.98
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
ACACACCAGACGATTGTGGTGCAGCTGCTGCAGTCTACCACACGCCTCCTCGAGTGTCCGTGGCTACAGCAGCAGCACAAGGGCTCCGTGGAGGCCTGCATCCGGACCCTCGCCATGGTGG
Seq A exon
CCAAGGGCCGGGCCATCTTGCTGCCCATGGACCTGGATGCCCACATCAGCTCGATGCTCAGCAGTGGAGCCAGCTGTGCAGCTGCCGCCCAGCGGAACGCCTCCAGCTACAAGGCAACCACGCGGGCCTTCCCCCGCGTCACCCCCACCGCCAACCAGTGGGACTACAAGAACATCATTGAGAAGCTGCAG
Seq C2 exon
GACATCATCACAGCCCTGGAGGAGCGGCTGAAGCCCCTGGTACAGGCTGAGCTGTCCGTGCTGGTGGATGTCCTGCACTGGCCTGAGCTGCTCTTCCTGGAGGGCAGTGAGGCCTACCAGCGCTGCGAGAGTGGGGGCTTCCTGTCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000096433-'79-86,'79-84,83-86=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCTGCAGTCTACCACACG
R:
GACAGGAAGCCCCCACTCTC
Band lengths:
243-434
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains