GgaEX6027037 @ galGal4
Exon Skipping
Gene
ENSGALG00000003149 | ITPR3
Description
inositol 1,4,5-trisphosphate receptor, type 3 [Source:HGNC Symbol;Acc:HGNC:6182]
Coordinates
chr26:4573340-4574632:-
Coord C1 exon
chr26:4574512-4574632
Coord A exon
chr26:4573597-4573781
Coord C2 exon
chr26:4573340-4573488
Length
185 bp
Sequences
Splice sites
3' ss Seq
CCCTTCCCCCTGTCCCGCAGCCA
3' ss Score
10.01
5' ss Seq
CAGGTATGG
5' ss Score
9.99
Exon sequences
Seq C1 exon
ACCCACCAGACCATTGTGGTGCAGCTTCTCCAGTCCACCATGAGGCTGTTGGAGTGCTCCTGGCTGCAGCAGCAGCACAAGAGCTCAGTGGAGGCCTGCATCCGAACGCTGGCGATGGTTG
Seq A exon
CCAAGAGCCGCTCCATCGCGCTGCCCATGGACCTGGATGCCCACGTCAGCTCCCTGCTCAACAGCAGCTCCACCAGTACCGTGCAGAGGAACACGTCCAGCTACAAGACGGCCACGCGGACCTTCCCCCGCGTCTCCACCACCCCCAACCAGTGGGACTACAAGAACATCATAGAGAAGCTGCAG
Seq C2 exon
GACATCATTAATGCCCTGGAGGACCGCTTGAAACCACTTGTGGAGGCTGAACTGTCCGTGCTGGTGGATGTCCTCCACCGGCCAGAGCTGCTCTTCATGGAGGGCACGGAGGCGTATCAGCGATGTGAGAGCGGAGGTTTCCTGTCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003149-'37-41,'37-40,39-41=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.113 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGTGGTGCAGCTTCTCCAG
R:
GAAACCTCCGCTCTCACATCG
Band lengths:
250-435
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]