BtaEX6096985 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013245 | ITPR3
Description
Bos taurus inositol 1,4,5-trisphosphate receptor, type 3 (ITPR3), mRNA. [Source:RefSeq mRNA;Acc:NM_174370]
Coordinates
chr23:7742599-7744147:+
Coord C1 exon
chr23:7742599-7742719
Coord A exon
chr23:7743227-7743417
Coord C2 exon
chr23:7743999-7744147
Length
191 bp
Sequences
Splice sites
3' ss Seq
CCCGACCCCTCTCCTCTCAGCCA
3' ss Score
7.64
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
Exon sequences
Seq C1 exon
ACGCACCAGACGATCGTGGTACAGCTGCTGCAGTCCACCATGCGGCTGCTCGAGTGTCCGTGGCTGCAGCAGCAGCACAAGGGCTCCGTGGAGGCCTGCATCCGGACCCTCGCCATGGTGG
Seq A exon
CCAAGGGCCGGGCCATCTCGCTGCCCATGGACTTGGATGCCCACATCAGCTCGCTGCTCAGCAGTGGTGCCAGCTGTGTGGCTGCCGCCCAGCGGAATGCCTCCAACTACAAGACGGCCACGCGGGCCTTCCCCCGTGTCATGCCCACTGCCAACCAGTGGGACTACAAGAACATCATCGAGAAGCTGCAG
Seq C2 exon
GACATCATCACTGCCCTGGAGGAGCGGCTGAGGCCCCTGGTGCAGGCCGAGCTGTCCGTGCTGGTGGATGTCCTGCACTGGCCCGAGCTGCTCTTCCTGGAGGGCAGTGACGCCTACCAGCGCTGCGAGAGCGGGGGCTTCCTGTCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013245-'40-38,'40-37,42-38=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGACGATCGTGGTACAGCTG
R:
CTCTCGCAGCGCTGGTAG
Band lengths:
246-437
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]