MmuEX6076240 @ mm9
Exon Skipping
Gene
ENSMUSG00000042644 | Itpr3
Description
inositol 1,4,5-triphosphate receptor 3 [Source:MGI Symbol;Acc:MGI:96624]
Coordinates
chr17:27247425-27248291:+
Coord C1 exon
chr17:27247425-27247545
Coord A exon
chr17:27247776-27247966
Coord C2 exon
chr17:27248143-27248291
Length
191 bp
Sequences
Splice sites
3' ss Seq
AGCACTGCCCTCTCTTGCAGCCA
3' ss Score
9.76
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
Exon sequences
Seq C1 exon
ACGCACCAGACAATTGTGGTCCAGCTGCTGCAGTCCACCACGCGGCTGCTCGAGTGTCCTTGGCTGCAGCAGCAGCATAAGGGCTCCGTGGAGGCCTGTGTCCGCACCCTCGCCATGGTGG
Seq A exon
CCAAGAGTAGAGCCATCTTGCTGCCAATGGATCTGGATGCCCACATGAGCGCCCTGCTCAGCAGTGGGGGCAGCTGTTCCGCCGCTGCCCAGCGCAGCGCTGCCAACTACAAGACGGCCACCAGGACCTTCCCTCGGGTCATCCCCACTGCCAACCAGTGGGACTACAAGAACATCATTGAGAAGTTACAG
Seq C2 exon
GATATCATCATGGCCCTAGAAGAGCGGCTGAAGCCTCTGGTACAGGCTGAGCTCTCTGTCCTTGTGGACATGCTGCACTGGCCTGAGCTGCTTTTTCCAGAGGGCAGTGAGGCCTACCAGCGCTGCGAGAGCGGGGGCTTCCTGTCTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000042644-'39-37,'39-36,40-37=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACCAGACAATTGTGGTCCA
R:
CTCTCGCAGCGCTGGTAG
Band lengths:
250-441
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: