RnoEX6062122 @ rn6
Exon Skipping
Gene
ENSRNOG00000001165 | Tmprss3
Description
transmembrane serine protease 3 [Source:RGD Symbol;Acc:1310135]
Coordinates
chr20:9921454-9925352:-
Coord C1 exon
chr20:9925229-9925352
Coord A exon
chr20:9922791-9922916
Coord C2 exon
chr20:9921454-9921497
Length
126 bp
Sequences
Splice sites
3' ss Seq
GGTTTCCAATGTGCCCGCAGCTA
3' ss Score
7.59
5' ss Seq
GAGGTAAGC
5' ss Score
9.85
Exon sequences
Seq C1 exon
TGCGGGTGAGCGGCCAAAGAGCAGCGCTCCAAGTGTTCACGGCTGCTGCATGGAGGACCATGTGTTCAGATGACTGGAAAAGCCACTATGCCAAGATTGCCTGTGCCCAGCTGGGGTTTCCCAG
Seq A exon
CTATGTGAGCTCAGACCACCTCAGAGTGGATGCACTTGAGGAGCAGTTCCAGGGCGACTTCGTGTCCATCAATCACCTCTTGCCAGATGACAAGGTGACCGCATTACACCACTCTGTGTACATGAG
Seq C2 exon
GGAAGGCTGCACCTCAGGCCATGTGGTCACCTTGAAGTGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001165-'4-4,'4-3,5-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF154941=SRCR_2=PU(37.0=88.1)
A:
PF154941=SRCR_2=FE(42.0=100)
C2:
PF154941=SRCR_2=FE(15.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAGCGGCCAAAGAGCAG
R:
TGAGCACTTCAAGGTGACCAC
Band lengths:
162-288
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]