DreEX6033027 @ danRer10
Exon Skipping
Gene
ENSDARG00000036545 | TMPRSS3 (1 of 2)
Description
transmembrane protease, serine 3 [Source:HGNC Symbol;Acc:HGNC:11877]
Coordinates
chr1:46257469-46262122:+
Coord C1 exon
chr1:46257469-46257592
Coord A exon
chr1:46260631-46260759
Coord C2 exon
chr1:46262076-46262122
Length
129 bp
Sequences
Splice sites
3' ss Seq
TTACCTGTCTTTGACTGAAGTTA
3' ss Score
4.2
5' ss Seq
TAGGTAAAC
5' ss Score
5.88
Exon sequences
Seq C1 exon
TGCGAGTGAGTGGCAGACACTCAGTGCTGCAGGTCTTCGGCAGGGGCTTATGGAGGACTGTGTGCTCTGAGGGCTGGGATTCCCAACTGAGCACTTTAGCCTGCAGACAACTGGGATACAGCAG
Seq A exon
TTACGTGAGCTCTGCCGCCATTCCCATCTCCTCCATTGAAGAAGTCTTCCAGCACAATCTAGTCGCTGTTAAAATCAACCAAACACACCTTCATGACACCTTCAGGATCCAGAACTATTCATATGCTAG
Seq C2 exon
AAACACCCACTGCAATTCTGGCTTAGTGACTGCTGTCAAATGTATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000036545-'4-6,'4-5,5-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF154941=SRCR_2=PU(36.3=88.1)
A:
PF154941=SRCR_2=FE(42.2=100)
C2:
PF154941=SRCR_2=FE(15.7=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCGAGTGAGTGGCAGACA
R:
GACAGCAGTCACTAAGCCAGA
Band lengths:
161-290
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]