GgaEX6004445 @ galGal4
Exon Skipping
Gene
ENSGALG00000016169 | TMPRSS3
Description
transmembrane protease, serine 3 [Source:HGNC Symbol;Acc:HGNC:11877]
Coordinates
chr1:108744560-108746322:-
Coord C1 exon
chr1:108746199-108746322
Coord A exon
chr1:108745161-108745286
Coord C2 exon
chr1:108744560-108744603
Length
126 bp
Sequences
Splice sites
3' ss Seq
TGTTTATGCTTTATTTGCAGTTA
3' ss Score
8.06
5' ss Seq
GAGGTACGC
5' ss Score
9.4
Exon sequences
Seq C1 exon
TCAGGCTGAGTGGCAAGAGAGCTGTGCTGCAGGTGTTCACCTCAGGATCCTGGCGAACAGTCTGTTCTGATGACTGGAAGACAGAGTATGGAAATACTACCTGTAAACACCTGGGTTTCTCAAG
Seq A exon
TTATGTGAGTTCAGGTTACCTGCCTGTGGCTGCTGTTGAAAAACAGTTTCAAAGACATTTTGTATCCCTCAGCCATTGGTTATCAGTGGATCAAGTGACATCCCTGCACAACGCAACCAACTTGAG
Seq C2 exon
GGAAGAATGCACTTCTGGCAATGTAATCATCTTAAAGTGTTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016169-'5-6,'5-5,6-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF154941=SRCR_2=PU(37.0=88.1)
A:
PF154941=SRCR_2=FE(42.0=100)
C2:
PF154941=SRCR_2=FE(15.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGGCTGAGTGGCAAGAGAG
R:
ACACTTTAAGATGATTACATTGCCA
Band lengths:
164-290
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]