DreEX0080002 @ danRer10
Exon Skipping
Gene
ENSDARG00000053315 | tmprss3a
Description
transmembrane protease, serine 3a [Source:ZFIN;Acc:ZDB-GENE-070912-70]
Coordinates
chr9:19750246-19766469:-
Coord C1 exon
chr9:19766346-19766469
Coord A exon
chr9:19762327-19762455
Coord C2 exon
chr9:19750246-19750292
Length
129 bp
Sequences
Splice sites
3' ss Seq
CTTTTCTCCATCTCTTTAAGGTT
3' ss Score
11.2
5' ss Seq
CAGGTACAA
5' ss Score
7.09
Exon sequences
Seq C1 exon
TGCGTCTGAGTGGAAAGAGCTCTGTACTTCAGGTGCTTAATGATGGAGTCTGGAGGACGGTTTGTGCTGAGAACTGGAACTCCAATCTTTCACTCTCGGCTTGTAAGCAGCTTGGCTATTCCAG
Seq A exon
GTTTGTGGAGTCAAAAGCTCTTCCTCTGTCCTTTATTGAGCAGGATTACCAGAATAACCTGATATCAATAGGACTGAACCAAACAAGTTTTCAGCAACCAGTCAAGATACACAACATAACTAATTCCAG
Seq C2 exon
TAAAACTAAGTGCAGTCTGGGAATGGTAACAGCACTTAAGTGCATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000053315-'6-6,'6-5,7-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF154941=SRCR_2=PU(36.3=88.1)
A:
PF154941=SRCR_2=FE(42.2=100)
C2:
PF154941=SRCR_2=FE(15.7=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGTCTGAGTGGAAAGAGCTC
R:
ACTTAAGTGCTGTTACCATTCCCA
Band lengths:
164-293
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]