MmuEX6076646 @ mm10
Exon Skipping
Gene
ENSMUSG00000024034 | Tmprss3
Description
transmembrane protease, serine 3 [Source:MGI Symbol;Acc:MGI:2155445]
Coordinates
chr17:31189673-31193577:-
Coord C1 exon
chr17:31193454-31193577
Coord A exon
chr17:31191001-31191126
Coord C2 exon
chr17:31189673-31189716
Length
126 bp
Sequences
Splice sites
3' ss Seq
GGTTTCCAATGTGCCTGCAGCTA
3' ss Score
6.9
5' ss Seq
GAGGTAAGC
5' ss Score
9.85
Exon sequences
Seq C1 exon
TGCGGGTGAGCGGCCAAAGAGCGGCGCTCCAAGTGTTCACAGCTGCTGCGTGGAGGACCATGTGCTCCGATGACTGGAAAAGCCACTATGCCAAGATTGCCTGTGCCCAGCTGGGGTTTCCCAG
Seq A exon
CTATGTGAGCTCAGACCACCTAAGAGTGGATGCGCTGGAGGAGCAGTTCCAGGGCGACTTCGTGTCCATCAATCACCTCTTGTCAGATGACAAGGTGACGGCGTTACACCACTCTGTGTACATGAG
Seq C2 exon
GGAAGGCTGCACCTCAGGCCACGTGGTCACCTTGAAGTGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024034-'5-8,'5-7,6-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF154941=SRCR_2=PU(37.0=88.1)
A:
PF154941=SRCR_2=FE(42.0=100)
C2:
PF154941=SRCR_2=FE(15.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGTGAGCGGCCAAAGAG
R:
GAGCACTTCAAGGTGACCACG
Band lengths:
163-289
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types