HsaEX0066074 @ hg19
Exon Skipping
Gene
ENSG00000160183 | TMPRSS3
Description
transmembrane protease, serine 3 [Source:HGNC Symbol;Acc:11877]
Coordinates
chr21:43804079-43808635:-
Coord C1 exon
chr21:43808512-43808635
Coord A exon
chr21:43805518-43805643
Coord C2 exon
chr21:43804079-43804122
Length
126 bp
Sequences
Splice sites
3' ss Seq
TCTTTCCAATGTGCTTGCAGCTA
3' ss Score
8.74
5' ss Seq
GAGGTAGGT
5' ss Score
9.65
Exon sequences
Seq C1 exon
TCCGGGTGGGTGGTCAGAATGCCGTGCTCCAGGTGTTCACAGCTGCTTCGTGGAAGACCATGTGCTCCGATGACTGGAAGGGTCACTACGCAAATGTTGCCTGTGCCCAACTGGGTTTCCCAAG
Seq A exon
CTATGTGAGTTCAGATAACCTCAGAGTGAGCTCGCTGGAGGGGCAGTTCCGGGAGGAGTTTGTGTCCATCGATCACCTCTTGCCAGATGACAAGGTGACTGCATTACACCACTCAGTATATGTGAG
Seq C2 exon
GGAGGGATGTGCCTCTGGCCACGTGGTTACCTTGCAGTGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160183-'5-9,'5-8,6-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF154941=SRCR_2=PU(37.0=88.1)
A:
PF154941=SRCR_2=FE(42.0=100)
C2:
PF154941=SRCR_2=FE(15.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGGTGGTCAGAATGCCG
R:
CTGTGCACTGCAAGGTAACCA
Band lengths:
163-289
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)