RnoEX6063945 @ rn6
Exon Skipping
Gene
ENSRNOG00000001434 | Zp3
Description
zona pellucida glycoprotein 3 [Source:RGD Symbol;Acc:620606]
Coordinates
chr12:23739733-23742190:-
Coord C1 exon
chr12:23741853-23742190
Coord A exon
chr12:23741341-23741459
Coord C2 exon
chr12:23739733-23739836
Length
119 bp
Sequences
Splice sites
3' ss Seq
ACACTATACCTTCGTTTCAGGTG
3' ss Score
9.88
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
Exon sequences
Seq C1 exon
CTGCGCCCGGCTGCATCCCAGGGAGCACCATGGGGCCCAGCTGTCTACTCTTCCTGTGTCTCCTGCTGTGCGGAGGCCCAGAACTGTGCTATCCCCAGACTCAATGGCTTTTACCGGGTGGAACCCCCACCCCAGCGGGGTCCTCATCACCTGTGGAGGTGGAGTGTAAGGAAGCTGAGCTAGTGGTGACTGTCCGTAGAGACCTTTTTGGCACAGGGAAGCTCGTGCAGCCCGGGGACCTCACCCTTGGCTCAGAAGGCTGTCAGCCCCTCGTAGCAGTGGATACTGACGTAGTCAGGCTCAACGCCCAGTTGCATGAATGCAGCAGCGGGGTGCAG
Seq A exon
GTGACAGAAGACGCCCTGGTGTACAGCACCTTTCTGCTCCACGACCCTCGCCCTGTGAATGGCCTGTCTATCCTAAGGACTAACCGGGTGGAGGTCCCCATTGAGTGCCGATACCCCAG
Seq C2 exon
GCAGGGCAATGTGAGCAGCCACCCTATCCAACCCACCTGGGTTCCCTTCAGCGCTACTGTGTCCTCGGAGGAGAAACTGGCTTTCTCTCTTCGTCTGATGGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001434-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.087 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0010018=Zona_pellucida=PU(22.3=56.3)
A:
PF0010018=Zona_pellucida=FE(15.0=100)
C2:
PF0010018=Zona_pellucida=FE(13.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTGAGCTAGTGGTGACTGT
R:
CCAGTTTCTCCTCCGAGGACA
Band lengths:
246-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]