GgaEX6007350 @ galGal3
Exon Skipping
Gene
ENSGALG00000001559 | ZP3_CHICK
Description
NA
Coordinates
chr10:3496411-3497292:+
Coord C1 exon
chr10:3496411-3496785
Coord A exon
chr10:3496993-3497111
Coord C2 exon
chr10:3497189-3497292
Length
119 bp
Sequences
Splice sites
3' ss Seq
TGTGCACTTTCCCTGCCCAGGTG
3' ss Score
10.05
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
ATGCTGGGTGAGCTGGCAGCAGGCGGGATGCAAGGCGGCCGCGTGGTGCTGGGCCTCCTGTGCTGCTTGGTGGCCGGGGTGGGCTCCTACACGCCCTGGGACATCTCCTGGGCAGCACGAGGGGACCCCTCTGCCTGGTCCTGGGGGGCCGAGGCGCACTCACGGGCCGTGGCCGGCTCGCACCCGGTGGCCGTGCAGTGCCAAGAGGCGCAGCTGGTGGTGACGGTGCACAGGGACCTCTTCGGCACAGGGCGTCTCATCAACGCTGCTGACCTGACTCTGGGCCCGGCTGCCTGCAAGCACTCCTCGCTCAACGCCGCACACAACACCGTCACCTTCGCCGCCGGCCTCCACGAGTGCGGCAGCGTCGTGCAG
Seq A exon
GTGACGCCAGACACCCTCATCTACCGCACGCTCATCAACTACGACCCCAGCCCTGCTAGCAACCCCGTCATCATCCGCACCAACCCTGCTGTCATCCCCATCGAGTGCCACTACCCCAG
Seq C2 exon
GAGGGAGAACGTGAGCAGCAATGCCATCCGGCCCACCTGGTCCCCCTTCAACTCCGCACTGTCAGCCGAGGAGAGGCTGGTGTTCTCCCTGCGCCTCATGAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001559-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0010018=Zona_pellucida=PU(22.7=47.2)
A:
PF0010018=Zona_pellucida=FE(15.0=100)
C2:
PF0010018=Zona_pellucida=FE(13.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGTGCAGTGCCAAGAGG
R:
CTGACAGTGCGGAGTTGAAGG
Band lengths:
250-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]