HsaEX6008577 @ hg38
Exon Skipping
Gene
ENSG00000188372 | ZP3
Description
zona pellucida glycoprotein 3 [Source:HGNC Symbol;Acc:HGNC:13189]
Coordinates
chr7:76425052-76433030:+
Coord C1 exon
chr7:76425052-76425276
Coord A exon
chr7:76429515-76429633
Coord C2 exon
chr7:76432927-76433030
Length
119 bp
Sequences
Splice sites
3' ss Seq
ACTTCTCACCTTTCCTCCAGGTA
3' ss Score
12.05
5' ss Seq
CAGGTCGGT
5' ss Score
7.53
Exon sequences
Seq C1 exon
GGTGGAGCCAGCCATCCTGAGACGTCCGTACAGCCCGTACTGGTGGAGTGTCAGGAGGCCACTCTGATGGTCATGGTCAGCAAAGACCTTTTTGGCACCGGGAAGCTCATCAGGGCTGCTGACCTCACCTTGGGCCCAGAGGCCTGTGAGCCTCTGGTCTCCATGGACACAGAAGATGTGGTCAGGTTTGAGGTTGGACTCCACGAGTGTGGCAACAGCATGCAG
Seq A exon
GTAACTGACGATGCCCTGGTGTACAGCACCTTCCTGCTCCATGACCCCCGCCCCGTGGGAAACCTGTCCATCGTGAGGACTAACCGCGCAGAGATTCCCATCGAGTGCCGCTACCCCAG
Seq C2 exon
GCAGGGCAATGTGAGCAGCCAGGCCATCCTGCCCACCTGGTTGCCCTTCAGGACCACGGTGTTCTCAGAGGAGAAGCTGACTTTCTCTCTGCGTCTGATGGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000188372-'11-9,'11-8,17-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.027
Domain overlap (PFAM):
C1:
PF0010018=Zona_pellucida=PU(20.6=98.1)
A:
PF0010018=Zona_pellucida=FE(15.5=100)
C2:
PF0010018=Zona_pellucida=FE(13.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAAGACCTTTTTGGCACCG
R:
CCTCCATCAGACGCAGAGAGA
Band lengths:
250-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains