BtaEX0041616 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000014834 | ZP3
Description
Bos taurus zona pellucida glycoprotein 3 (sperm receptor) (ZP3), mRNA. [Source:RefSeq mRNA;Acc:NM_173974]
Coordinates
chr25:34960635-34963904:+
Coord C1 exon
chr25:34960635-34960976
Coord A exon
chr25:34962843-34962961
Coord C2 exon
chr25:34963801-34963904
Length
119 bp
Sequences
Splice sites
3' ss Seq
AACCCCTTCCTTTCCCTCAGGTG
3' ss Score
11.47
5' ss Seq
CAGGTCTGT
5' ss Score
6.84
Exon sequences
Seq C1 exon
GTCACAGTGGGTGGGAGTGGCTTCGTGGGCACCATGGGGCCGTGCTCTAGGCTGTTCGTCTGCTTTCTGCTCTGGGGAAGCACAGAGCTCTGCAGCCCCCAGCCCTTCTGGGATGATGAAACCGAGCGCTTCAGGCCATCAAAGCCGCCCGCCGTGATGGTGGAGTGTCAGGAGGCCCAGCTGGTGGTCACAGTCGACAAAGACCTTTTCGGCACCGGGAAGCTCATCCGGCCTGCGGACCTCACCCTGGGCCCCGACAACTGTGAGCCGCTGGCCTCCGCGGACACGGATGGCGTGGTTAGGTTTGCGGTCGGGCTGCACGAGTGTGGCAACATCTTGCAG
Seq A exon
GTGACCGACAATGCCCTGGTGTACAGCACCTTCCTGCTCCACAACCCCCGCCCTGCAGGAAACCTGTCCATCCTGAGGACTAACCGCGCAGAGGTCCCCATCGAGTGCCACTACCCCAG
Seq C2 exon
GCAGGGCAATGTGAGTAGCTGGGCCATCCAGCCCACCTGGGTGCCATTCAGGACCACAGTGTTCTCGGAGGAGAAGCTGGTTTTCTCTCTGCGCCTGATGGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014834-'1-1,'1-0,6-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.029 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0010018=Zona_pellucida=PU(22.8=57.3)
A:
PF0010018=Zona_pellucida=FE(15.1=100)
C2:
PF0010018=Zona_pellucida=FE(13.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATGAAACCGAGCGCTTCAG
R:
CCAGCTACTCACATTGCCCTG
Band lengths:
251-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development