GgaEX6007302 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BUH5]
Coordinates
chr10:1762160-1763199:+
Coord C1 exon
chr10:1762160-1762408
Coord A exon
chr10:1762897-1763015
Coord C2 exon
chr10:1763096-1763199
Length
119 bp
Sequences
Splice sites
3' ss Seq
CTCCCAAATGTCCCTTCCAGATG
3' ss Score
9.24
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
CCGTCCCCATGGGCGTGGGTGGACGTGTCCCAGCTCCAGGCTGCGTCCCCACTGCACCCCGTGTCTGTGTGGTGCCAGGAGGCGCAGGTGGTGGTCACGGTGCACAGGGACCTCTTTGGCACCGGGCGCCTGGTCCGGGCTGCAGACCTGACCCTGGGAACGGCTGCCTGCCCGGCCACAGCCCAGAATGCTGCTGAGAACGTGGTGACCTTCACAGCTGGGCTGCATGAGTGTGGCAGCACCTTACAG
Seq A exon
ATGACACCAGACTCCTTGATCTACAAAACAAGTTTATTCTATAAACCTACTCCTGTTGGCAACATGGTCATTGTAAGGACCAGCCCAGCTGTAGTTCCTATTGAGTGTCACTATCCCAG
Seq C2 exon
GAGGAGCAATGTGAGCAGCAATGCTGTCCGACCTACGTGGGTTCCCTTCCACTCCACGCTGTCAATGGAAGAGAAGCTGGTGTTCTCCCTGCGCCTCATGAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001721-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0010018=Zona_pellucida=PU(22.7=71.1)
A:
PF0010018=Zona_pellucida=FE(15.0=100)
C2:
PF0010018=Zona_pellucida=FE(13.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCACAGGGACCTCTTTGG
R:
GCAGGGAGAACACCAGCTTC
Band lengths:
242-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]